Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs1106646 chr10:43532377 C/G 3.78E-5 287 25.63 25.5 11.43 KM Plot
KIRP rs1106647 chr10:43532650 G/A 5.46E-5 287 25.62 25.95 11.43 KM Plot
KIRP rs11068003 chr12:116797470 A/G 0 279 26.07 21.17 4.07 KM Plot
KIRP rs11076663 chr16:90121131 A/C 1.41E-7 286 24.67 35.32 10.7 KM Plot
KIRP rs11081529 chr18:75902735 C/T 2.29E-5 289 18.02 26.37 25.97 KM Plot
KIRP rs11085249 chr19:19099584 A/G 5.52E-5 285 25.78 27.47 25.37 KM Plot
KIRP rs11087717 chr20:6091175 T/G 0.000115 289 25.82 26.4 9 KM Plot
KIRP rs11087718 chr20:6091183 T/C 0.000115 289 25.82 26.4 9 KM Plot
KIRP rs1111725 chr1:89515195 A/T 5.49E-5 284 18.9 34.67 26.1 KM Plot
KIRP rs11123824 chr2:100924029 G/A 0.000172 285 26.92 25.7 25.15 KM Plot
KIRP rs111256003 chr12:49871011 G/A 4.32E-6 285 25.57 39.53 10.97 KM Plot
KIRP rs111264737 chr21:44244353 T/C 0.000169 288 25.53 43.53 13.07 KM Plot
KIRP rs111275502 chr7:20679657 T/C 2.38E-5 287 25.7 22.57 11.2 KM Plot
KIRP rs111309411 chr21:44244645 C/A 0.000169 288 25.53 43.53 13.07 KM Plot
KIRP rs111343887 chr7:20676281 A/C 2.38E-5 287 25.7 22.57 11.2 KM Plot